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Journal Articles

  1. Adams JC, Sachdev E, Steck V, Castaneda J, Lampe RH, McClure C, Nguyen T, Füssy Z, Gonzalez DJ, Allen AE, Bowman JS, Aluwihare LI, and JM Diaz. (in review). Alkaline phosphatase mediates heterotrophic carbon acquisition in the California Current Ecosystem.
  2. Lin YY, Palmer M, Lampe RH, and A Marchetti. (in review) Co-occurring coastal diatoms exhibit divergent responses to the upwelling cycle.
  3. James CC, Hou L, Lampe RH, Barbeau KA, Barton AD, Stukel MR, and AE Allen. (in review) Contrasting productivity-diversity patterns across taxonomic groups in a coastal upwelling ecosystem.
  4. Steck V, Lampe RH, Bhakta S, Marrufo KC, Adams JC, Sachdev E, Forsch KO, Barbeau KA, Allen AE, and Diaz JM. (in revision) Atypical phosphatases drive dissolved organic phosphorus utilization by phosphorus-stressed phytoplankton in the California Current Ecosystem. Preprint: https://doi.org/10.1101/2025.04.09.648040
  5. Lampe RH, Wood-Rocca SM, and Allen AE. (in revision) Phytoplankton community responses to environmental change in the California Current Ecosystem.
  6. de Souza A, Gu S, Kranz SA, Rose J, Lampe RH, Io KH, Deng L, Allen AE, Liu H, Follett C, Landry MR, and N Cassar. (in revision) Coastal hotspots of biological nitrogen fixation in an undersampled region of the eastern Indian Ocean.
  7. Zoumplis A, Füssy Z, Kaul D, Schulte N, Zheng H, Lampe RH, Brykla K, Venepally P, Mikucki JA, McKnight DM, and AE Allen. (in press) Molecular evidence for a relict marine refuge in the McMurdo Dry Valleys, Antarctica. Nature Geoscience.
  8. Patin NV, Jacobson EK, Gold Z, Dinasquet J, Van Cise AM, Ellman B, Lampe RH, Schulberg A, Bowlin N, Freedman R, Allen A, Satterthwaite E, and BX Semmens. (in press) Maximizing eDNA detections of rare marine organisms: a case study of a delphinid species. Methods in Ecology and Evolution.
  9. Coale TH, Lampe RH, Tan M, Rowland E, Füssy Z, Venepally P, Zheng H, McCrow J, Bertrand EM, and Allen AE. (2026) Molecular and physiological acclimation to low light and iron scarcity in a globally abundant oceanic pelagophyte. Nature Communications 17, 5480.
  10. Satterthwaite EV, Ruiz TD, Patin NV, Alksne MN, Thomas L, Dinasquet J, Lampe RH, Chan KG, Patrick NA, Allen AE, Baumann-Pickering S, and Semmens BX. (2026) Microbial and small zooplankton communities predict density of baleen whales in the southern California Current Ecosystem. PLOS One 21: e0334209
  11. Selph KE, Lampe RH, Yingling N, Bhabu R, Kranz SA, Allen AE, and Landry MR. (2026) Phytoplankton community composition in the oligotrophic Argo Basin of the Eastern Indian Ocean. Deep Sea Research Part II 226, 105602.
  12. Landry ML, Laiz-Carrión R, Kranz SA, Selph KE, Stukel MR, Malca E, Die D, Beckley LE, Décima M, Swalethorp R, Quintanilla JM, Yingling N, Davies C, Traboni C, Borrego-Santos R, Goes JI, deSouza A, Fernández PR, Pennino G, Kim LE, Kehinde O, Lampe RH, Allen AE, Kelly TB, Muhling BA, Gu S, Cassar N, Laget M, Biard T, Liu H, Io KH, Shiroza A, Gawley C, Fender CK, Rose HM, Jivanjee A, Matisons L. (2025) Overview of BLOOFINZ/INDITUN investigations of the southern bluefin spawning region off northwest Australia, January-March 2022. Deep Sea Research Part II 224, 105564.
  13. Lampe RH, Rabines AJ, Wood SM, Schulberg A, Goericke R, Venepally P, Zheng H, Stukel MR, Landry MR, Barton AD, and Allen AE. (2025) Relationships between phytoplankton pigments and DNA- or RNA-based abundances support ecological applications. Biogeosciences 22, 6787-6810.
  14. Füssy Z, Lampe RH, Arrigo KR, Barry K, Brisbin MM, Brussaard CPD, Decelle J, de Vargas C, DiTullio GR, Elbourne LD, Frischer ME, Goodstein DM, Grigoriev IV, Hayes RD, Healey AL, James CC, Jenkins JW, Juery C, Kumar M, Kustka AB, Maumus F, Oborník M, Paulsen IT, Probart I, Saito MA, Schmutz J, Skalický T, Tec-Campos D, Tomelka H, Novák Vanclová AMG, Vechtová P, Venepally P, Wilson-Mortier B, Zengler K, Zheng H, and Allen AE. (2025) Genome-resolved biogeography of Phaeocystales, cosmopolitan bloom-forming microalgae. Nature Communications 16, 8559.
  15. Stukel MR, Allen AE, Barbeau KA, Chabert P, Dovel S, Gangrade S, Kranz SA, Lampe RH, Landry MR, Marrec P, Messié M, Miller AJ, Wilkinson G, and Ohman MD. (2025) Disturbance ecology in a pelagic upwelling biome: Lagrangian frameworks for studying succession. Bioscience, biaf144.
  16. Lampe RH, Rabines AJ, Ellman BA, Zheng H, and Allen AE. (2025) Marine microbial mock communities for validating rRNA gene amplicon sequencing. Microbiology Resource Announcements 14:e00298-25.
  17. Lampe RH, Coale TH, McQuaid JB, and Allen AE. (2024) Molecular Mechanisms for Iron Uptake and Homeostasis in Marine Eukaryotic Phytoplankton. Annual Review of Microbiology 78, 213-32.
  18. James CC, Allen AE, Lampe RH, Rabines A, and Barton AD. (2024) Endemic, cosmopolitan, and generalist taxa and their habitat affinities within a coastal marine microbiome. Scientific Reports 14, 22408.
  19. Haghani N, Lampe RH, Samuel B, Chalasani SH, and Matty MA. (2024) Identification and characterization of a skin microbiome on Caenorhabditis elegans suggests environmental microbes confer cuticle protection. Microbiology Spectrum 12:e00169-24.
  20. Ternon E, Carter ML, Cancelada L, Lampe RH, Allen AE, Anderson C, Prather K, Gerwick W. (2023) Yessotoxin production and aerosolization during the unprecedented red tide of 2020 in southern California. Elementa: Science of the Anthropocene, 11:00021.
  21. Lampe RH, Coale TH, Forsch KO, Jabre LJ, Kekuewa S, Bertrand EM, Horák A, Oborník M, Rabines AJ, Rowland E, Zheng H, Andersson AJ, Barbeau KA, and Allen AE. (2023) Short-term acidification promotes diverse iron acquisition and conservation mechanisms in upwelling-associated phytoplankton. Nature Communications 14, 7215.
  22. Satterthwaite EV, Allen AE, Lampe RH, Gold Z, Thompson AR, Bowlin N, Swalethorp R, Goodwin KD, Hazen EL, Bograd SJ, Matthews SA, and Semmens BX. (2023) Toward identifying the critical ecological habitat of larval fishes: An environmental DNA window into fisheries management. Oceanography 36 (Supplement 1), 90-93.
  23. Maniscalco MA, Brzezinski MA, Lampe RH, Cohen NR, McNair HM, Ellis KA, Brown M, Till CP, Twining BS, Bruland KW, Marchetti A, and Thamatrakoln K. (2022) Diminished carbon and nitrate assimilation drive changes in diatom elemental stoichiometry independent of silicification in an iron-limited assemblage. ISME Communications 2, 57.
  24. Cohen NR, Alexander HA, Krinos AI, Hu SK, and Lampe RH. (2022) Marine microeukaryote metatranscriptomics: sample processing and bioinformatic workflow recommendations for ecological applications. Frontiers in Marine Science 9, 867007.
  25. James CC, Barton AD, Allen LZ, Lampe RH, Rabines A, Schulberg A, Zheng H, Goericke R, Goodwin KD, and Allen AE. (2022) Influence of nutrient supply on plankton microbiome biodiversity and distribution in a coastal upwelling region. Nature Communications 13, 2448
  26. Kranzler CF, Brzezinski MA, Cohen NR, Lampe RH, Maniscalco M, Till CP, Mack J, Latham JR, Bruland KW, Twining BS, Marchetti A, and Thamatrakoln K. (2021) Impaired viral infection and reduced mortality of diatoms in iron-limited oceanic regimes. Nature Geoscience 14, 231-237.
  27. Lampe RH, Hernandez G, Lin Y-Y, and Marchetti A. (2021) Representative diatom and coccolithophore species exhibit divergent responses throughout simulated upwelling cycles. mSystems 6:e00188-21.
  28. Lampe RH, Wang S, Cassar N, and Marchetti A. (2019) Strategies among phytoplankton in response to alleviation of nutrient stress in a subtropical gyre. The ISME Journal 13, 2984-2997.
  29. Till CP, Solomon JR, Cohen NR, Lampe RH, Marchetti A, Coale TH, and Bruland KW. (2019) The iron limitation mosaic in the California Current System: factors governing Fe availability in the shelf/near-shelf region. Limnology and Oceanography 64, 109-123.
  30. Lampe RH, Mann EL, Cohen NR, Till CP, Thamatrakoln K, Brzezinski MA, Bruland KW, Twining BS, and Marchetti A. (2018) Different iron storage strategies among bloom-forming diatoms. Proceedings of the National Academy of Sciences USA 115, E12275-E12284.
  31. Lampe RH, Cohen NR, Ellis KA, Bruland KW, Maldonado MT, Peterson TD, Till CP, Brzezinski MA, Bargu S, Thamatrakoln K, Kuzminov FI, Twining BS, and Marchetti A. (2018) Divergent gene expression among phytoplankton taxa in response to upwelling. Environmental Microbiology 20, 3069-3082.
  32. Cohen NR, Ellis KA, Lampe RH, McNair H, Twining BS, Brzezinski MA, Maldonado MT, Kuzminov FI, Thamatrakoln K, Till CP, Bruland KW, Sunda WG, Bargu S, and Marchetti A. (2017) Variations in diatom transcriptional response to changes in iron availability across ocean provinces. Frontiers in Marine Science 4, 360.
  33. Cohen NR, Ellis KA, Burns WG, Lampe RH, Schuback N, Johnson ZI, Sañudo-Wilhelmy SA, and Marchetti A. (2017) Iron and vitamin interactions in marine diatom isolates and natural assemblages of the Northeast Pacific Ocean. Limnology and Oceanography 62, 2076-2096.
  34. Marchetti A, Moreno CM, Cohen NR, Oleinikov I, Delong K, Twining BS, Armbrust EV, and Lampe RH. (2017) Development of a molecular-based index for assessing iron status in bloom-forming pennate diatoms. Journal of Phycology 53, 820-832.
  35. Schnetzer A, Lampe RH, Benitez-Nelson CR, Marchetti A, Osburn CL, and Tatters AO. (2017) Marine snow formation by the toxin-producing diatom, Pseudo-nitzschia australis. Harmful Algae 61, 23-30.

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Thesis & Dissertation