R function for making MA plots with taxonomic pie charts as points.
I'm currently working on an updated version that uses ggplot. Please contact me if you're interested.Source Code (github)
Pseudo-nitzschia Iron Limitation Index (ILI) Calculatorhttps://marchettilab.web.unc.edu/PsnILI/
The Pseudo-nitzschia ILI was developed to assess the in situ iron status of Pseudo-nitzschia with a incubation-independent, molecular-based approach. Here we provide a calculator to rapidly assess the Pseudo-nitzschia ILI from raw RNA-seq counts of two genes: FTN and ISIP2a.
Citation: Marchetti A, Moreno CM, Cohen NR, Oleinikov I, Delong K, Twining BS, Armbrust EV, and Lampe RH. (2017) Development of a molecular-based index for assessing iron status in bloom-forming pennate diatoms. Journal of Phycology 53, 820-832.